LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-519e-3p


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Gene
miRNA
Score
DIANA Links
chr22-38_28785274-29006793.1
hsa-miR-519e-3p
1.000
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623644
Biotype: lincRNA
Gene id: ENSG00000279978
Gene Name: chr22-38_28785274-29006793.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519e-3p
Sequence: aagugccuccuuuuagaguguu
MirBase ID: MIMAT0002829
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
126831-126845
0.017
7
8mer
132085-132099
0.011
1
7mer
193796-193818
0.008
0
7mer
172333-172357
0.007
3
7mer
84891-84913
0.007
3
8mer
112392-112419
0.006
1
8mer
111684-111707
0.005
0
8mer
232595-232606
0.005
0
8mer
242287-242312
0.005
1
7mer
23680-23706
0.005
1
7mer
81581-81597
0.004
6
8mer
57412-57437
0.004
Not Conserved
7mer
114388-114400
0.004
1
7mer
7297-7316
0.004
2
7mer
26010-26033
0.004
2
7mer
106907-106925
0.004
2
7mer
94354-94370
0.004
1
8mer
83660-83675
0.004
1
7mer
99642-99656
0.004
2
7mer
8241-8252
0.003
4
7mer
140816-140833
0.003
0
7mer
35124-35139
0.003
3
7mer
208967-208986
0.003
2
7mer
52888-52908
0.003
4
6mer
511-526
0.003
1
6mer
30976-30993
0.003
2
8mer
213904-213926
0.003
0
7mer
133475-133497
0.003
2
6mer
13510-13536
0.003
2
6mer
64493-64506
0.003
2
6mer
212106-212122
0.003
3
7mer
152536-152552
0.003
0
8mer
82016-82027
0.003
1
6mer
72767-72790
0.003
1
8mer
94413-94432
0.003
1
7mer
55418-55442
0.002
0
6mer
141361-141382
0.002
6
6mer
210060-210076
0.002
5
6mer
169104-169128
0.002
1
6mer
160696-160713
0.002
3
6mer
188667-188684
0.002
1
6mer
56231-56248
0.002
1
6mer
165407-165432
0.002
4
6mer
178033-178054
0.002
1
6mer
162429-162445
0.002
2
6mer
83456-83482
0.002
3
6mer
84331-84347
0.002
1
6mer
154832-154852
0.002
1
7mer
217173-217189
0.002
1
6mer
213018-213031
0.002
Not Conserved
6mer
101851-101878
0.002
1
6mer
251121-251131
0.002
0
7mer
100415-100441
0.002
0
6mer
121436-121462
0.002
1
6mer
175850-175864
0.002
1
6mer
137921-137944
0.002
1
6mer
166759-166773
0.002
3
6mer
33761-33784
0.002
0
8mer+mismatch
674-692
0.002
1
6mer
170330-170342
0.002
0
6mer
50473-50499
0.002
0
6mer
156527-156541
0.002
Not Conserved
6mer
252275-252287
0.002
1
7mer
264982-264998
0.002
2
6mer
5343-5358
0.001
1
6mer
69093-69101
0.001
1
6mer
203601-203625
0.001
0
6mer
168515-168533
0.001
0
6mer
215793-215804
0.001
2
6mer
122728-122736
0.001
1
6mer
175606-175632
0.001
1
7mer
214999-215018
0.001
1
6mer
24701-24717
0.001
1
7mer
226546-226567
0.001
1
6mer
16829-16843
0.001
1
7mer
167838-167855
0.001
0
6mer
257892-257908
0.001
3
6mer
2579-2605
0.001
0
6mer
185936-185958
0.001
0
6mer
17379-17400
0.001
0
6mer
149046-149066
0.001
Not Conserved
6mer
258583-258598
0.001
0
6mer
211537-211555
0.001
1
6mer
228181-228200
0.001
1
6mer
121721-121738
0.001
0
6mer
214841-214862
0.001
0
6mer
118368-118390
0.001
2
6mer
152060-152080
0.001
1
6mer
232601-232625
0.001
Not Conserved
6mer
214093-214112
0.000
Not Conserved
RP11-798M19.3
hsa-miR-519e-3p
1.000
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000507803
Biotype: antisense
Gene id: ENSG00000248774
Gene Name: RP11-798M19.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519e-3p
Sequence: aagugccuccuuuuagaguguu
MirBase ID: MIMAT0002829
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
51-73
0.136
11
6mer
298-324
0.004
1
RP11-1006G14.2
hsa-miR-519e-3p
0.991
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000565543
Biotype: lincRNA
Gene id: ENSG00000259783
Gene Name: RP11-1006G14.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519e-3p
Sequence: aagugccuccuuuuagaguguu
MirBase ID: MIMAT0002829
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
125-144
0.087
0
RP11-212D3.4
hsa-miR-519e-3p
0.984
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000413763
Biotype: lincRNA
Gene id: ENSG00000226854
Gene Name: RP11-212D3.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519e-3p
Sequence: aagugccuccuuuuagaguguu
MirBase ID: MIMAT0002829
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1153-1178
0.078
0
BDNF-AS
hsa-miR-519e-3p
0.980
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000532965
Biotype: antisense
Gene id: ENSG00000245573
Gene Name: BDNF-AS
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-519e-3p
Sequence: aagugccuccuuuuagaguguu
MirBase ID: MIMAT0002829
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
486-507
0.066
14
8mer
35-54
0.009
1
RP3-323A16.1
hsa-miR-519e-3p
0.976
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623959
Biotype: antisense
Gene id: ENSG00000279184
Gene Name: RP3-323A16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519e-3p
Sequence: aagugccuccuuuuagaguguu
MirBase ID: MIMAT0002829
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
40252-40276
0.012
1
7mer
49198-49217
0.011
0
8mer
37549-37575
0.009
5
8mer
49417-49441
0.006
1
8mer
11845-11861
0.006
1
8mer
4808-4826
0.004
0
6mer
18593-18610
0.002
1
7mer
17108-17128
0.002
1
6mer
19910-19925
0.002
1
6mer
20927-20948
0.002
1
6mer
7404-7430
0.002
0
6mer
47366-47392
0.002
1
6mer
17402-17426
0.002
1
6mer
42750-42762
0.002
1
7mer
17536-17560
0.002
Not Conserved
6mer
31656-31671
0.001
0
6mer
31786-31810
0.001
1
6mer
41828-41841
0.001
1
6mer
30801-30806
0.001
0
6mer
17689-17713
0.001
0
6mer
3777-3792
0.001
Not Conserved
6mer
17185-17200
0.000
0
XLOC_008087
hsa-miR-519e-3p
0.976
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017273
Biotype: transcript isomorph
Gene id: XLOC_008087
Gene Name: XLOC_008087
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-519e-3p
Sequence: aagugccuccuuuuagaguguu
MirBase ID: MIMAT0002829
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
143-163
0.071
1
LINC01133
hsa-miR-519e-3p
0.975
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000423943
Biotype: lincRNA
Gene id: ENSG00000224259
Gene Name: LINC01133
UCSC graphic:
Expression:
  Cell Line Tissue Category
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-519e-3p
Sequence: aagugccuccuuuuagaguguu
MirBase ID: MIMAT0002829
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1059-1075
0.071
3
HOTAIRM1
hsa-miR-519e-3p
0.968
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000593300
Biotype: antisense
Gene id: ENSG00000233429
Gene Name: HOTAIRM1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-519e-3p
Sequence: aagugccuccuuuuagaguguu
MirBase ID: MIMAT0002829
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
362-378
0.066
9
RP11-159D12.2
hsa-miR-519e-3p
0.967
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000577267
Biotype: lincRNA
Gene id: ENSG00000264112
Gene Name: RP11-159D12.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-519e-3p
Sequence: aagugccuccuuuuagaguguu
MirBase ID: MIMAT0002829
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3980-4006
0.049
0
8mer
3676-3690
0.017
1
LINC00293
hsa-miR-519e-3p
0.967
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518962
Biotype: lincRNA
Gene id: ENSG00000253314
Gene Name: LINC00293
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519e-3p
Sequence: aagugccuccuuuuagaguguu
MirBase ID: MIMAT0002829
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
665-690
0.037
1
7mer
398-415
0.028
0
XLOC_013064
hsa-miR-519e-3p
0.966
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027536
Biotype: transcript isomorph
Gene id: XLOC_013064
Gene Name: XLOC_013064
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-519e-3p
Sequence: aagugccuccuuuuagaguguu
MirBase ID: MIMAT0002829
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
565-590
0.046
1
8mer
2491-2515
0.020
0
SRP14-AS1
hsa-miR-519e-3p
0.965
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000504245
Biotype: lincRNA
Gene id: ENSG00000248508
Gene Name: SRP14-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-519e-3p
Sequence: aagugccuccuuuuagaguguu
MirBase ID: MIMAT0002829
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2197-2216
0.049
2
7mer
315-340
0.010
2
6mer
676-701
0.004
2
6mer
567-584
0.002
0
LINC00293
hsa-miR-519e-3p
0.961
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000521715
Biotype: lincRNA
Gene id: ENSG00000253314
Gene Name: LINC00293
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519e-3p
Sequence: aagugccuccuuuuagaguguu
MirBase ID: MIMAT0002829
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1361-1386
0.031
1
7mer
547-564
0.019
0
6mer
681-700
0.012
1
LINC00293
hsa-miR-519e-3p
0.960
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: NR_027013.1
Biotype: lincRNA
Gene id: NR_027013.1 (gene)
Gene Name: LINC00293
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-519e-3p
Sequence: aagugccuccuuuuagaguguu
MirBase ID: MIMAT0002829
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1350-1375
0.030
1
7mer
536-553
0.020
0
6mer
670-689
0.013
1
BDNF-AS
hsa-miR-519e-3p
0.959
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: NR_033315.1
Biotype: antisense
Gene id: NR_033315.1 (gene)
Gene Name: BDNF-AS
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-519e-3p
Sequence: aagugccuccuuuuagaguguu
MirBase ID: MIMAT0002829
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
312-333
0.053
14
8mer
32-51
0.010
1
XLOC_009898
hsa-miR-519e-3p
0.959
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020584
Biotype: transcript isomorph
Gene id: XLOC_009898
Gene Name: XLOC_009898
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Ovary Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-519e-3p
Sequence: aagugccuccuuuuagaguguu
MirBase ID: MIMAT0002829
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
594-608
0.062
9
BDNF-AS
hsa-miR-519e-3p
0.959
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000499568
Biotype: antisense
Gene id: ENSG00000245573
Gene Name: BDNF-AS
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-519e-3p
Sequence: aagugccuccuuuuagaguguu
MirBase ID: MIMAT0002829
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
312-333
0.053
14
8mer
32-51
0.010
1
BDNF-AS
hsa-miR-519e-3p
0.959
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000500662
Biotype: antisense
Gene id: ENSG00000245573
Gene Name: BDNF-AS
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-519e-3p
Sequence: aagugccuccuuuuagaguguu
MirBase ID: MIMAT0002829
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
312-333
0.052
14
8mer
32-51
0.010
1
BDNF-AS
hsa-miR-519e-3p
0.958
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: NR_033312.1
Biotype: antisense
Gene id: NR_033312.1 (gene)
Gene Name: BDNF-AS
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-519e-3p
Sequence: aagugccuccuuuuagaguguu
MirBase ID: MIMAT0002829
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
312-333
0.052
14
8mer
32-51
0.010
1
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